Functions¶
This page documents helper functions defined in the pipeline.
Contents¶
buildIngestTabulateSamplesChannel¶
Defined in workflows/ingest_tabulate.nf:12
Build the samplesheet-derived metadata channel for the metadata-only path.
Parameters¶
| Name | Description | Default |
|---|---|---|
samplesheetPath |
- | - |
buildFullPipelineSamplesChannel¶
Defined in workflows/full_pipeline.nf:17
Build the metadata channel consumed by the full multi-species workflow.
The samplesheet must define one row per sample with the columns
sample_id, output_file_id, and species.
Parameters¶
| Name | Description | Default |
|---|---|---|
samplesheetPath |
- | - |
buildIngestExportSamplesChannel¶
Defined in workflows/ingest_export.nf:12
Build the samplesheet-derived metadata channel for the ingest/export workflow.
Parameters¶
| Name | Description | Default |
|---|---|---|
samplesheetPath |
- | - |
This pipeline was built with Nextflow. Documentation generated by nf-docs v0.2.1 on 2026-04-16 21:10:06 UTC.