GoodWorkflows API Reference

DSL2 Nextflow pipeline for composing reusable single-cell RNA-seq workflows on SLURM + Podman HPC systems.

Documentation

• Pipeline Inputs - Input parameters and options
• Configuration - Configuration parameters
• Workflows - Pipeline workflows
• Functions - Helper functions

Summary

• Inputs: 19 parameters
• Config params: 2
• Workflows: 3
• Processes: 0
• Functions: 3

Links

• Repository

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This pipeline was built with Nextflow. Documentation generated by nf-docs v0.2.1 on 2026-04-16 21:10:06 UTC.